I’m Andree Valle Campos (Γ©l/he/his)

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I’m a πŸ‡΅πŸ‡ͺ researcher trained in genetics and skilled in health data science


πŸ—οΈ I take data problems to learn new tools in the route to solve them, motivated by causal questions and reproducible research.

πŸ”“ Continuously integrating open science, software development and teaching online better practices!

🌱 Interested in systems developmental biology, quantitative and bioengineering approaches, living matter configuration principles.

⛑️ This website contains links to all my (reusable) scientific contributions. Here is a structured pdf version of my cv/resume.


vitae

bio

now

  • πŸ’» Freelancer, remote teacher, doing a research internship;
  • βœ’οΈ Writing my thesis manuscripts and grad school applications!
  • ✨ Crafted last serosurvey package πŸ“¦;
  • ⭐ Coordinator in a last outbreak analysis course in latinamerica;

bio

  • 🏠 I am a computationally-oriented researcher trained in genetics + biotechnology and quantitative epidemiological research;
  • πŸ“œ I did my MSc research about human mobility and malaria history in the peruvian amazon (UPCH, 2018);
  • πŸ“œ I did my BSc research about antibody responses and severe vivax malaria with protein microarrays (UNMSM, 2015);

skills

  • βš™οΈ I am a proficient R user, expert tidy data wrangler and ggplot2 visualization enthusiast.
  • ☁️ I am fluid with bash for automation, shh for remote computing, and shiny for reactive dashboards.
  • πŸ“€ I have made modeling workflows with omic, serological, gps, health service, and outbreak spatio-temporal data;
  • πŸ₯€ I have complemented my training with awesome communities: ictp-saifr, codata-rda, recon, metadocencia;

contact

  • πŸ’¬ Ping me about applied biostatistics, data science education, and reproducible research;
  • πŸ“« Reach me: avallecam at gmail;
  • 🐀 Tweet me: @avallecam.

works

writings

publications

  • πŸ“š I have my list of academic publications in orcid and scholar;
library(tidyverse)
id <- "p1Tq4esAAAAJ"
scholar::get_publications(id) %>% 
  as_tibble() %>% 
  select(title:year) %>% 
  arrange(desc(year)) %>% 
  knitr::kable()
title author journal number cites year
SARS-CoV-2 prevalence associated to low socioeconomic status and overcrowding in an LMIC megacity: A population-based seroepidemiological survey in Lima, Peru MF Reyes-Vega, MG Soto-Cabezas, F CΓ‘rdenas, KS Martel, A Valle, … EClinicalMedicine 34, 100801 26 2021
Early transmission dynamics of COVID-19 in a southern hemisphere setting: Lima-Peru: February 29th–March 30th, 2020. CV Munayco, A Tariq, R Rothenberg, GG Soto-Cabezas, MF Reyes, … Infectious Disease Modelling 80 2020
Malaria Transmission and Spillover across the Peru–Ecuador Border: A Spatiotemporal Analysis AK Gunderson, RE Kumar, C Recalde-Coronel, LE Vasco, … International Journal of Environmental Research and Public Health 17 (20), 7434 5 2020
MetodologΓ­as cuantitativas: CΓ‘lculo del tamaΓ±o de muestra con STATA y R AM Quispe, DF Pinto, MR HuamΓ‘n, GM Bueno, A Valle-Campos Revista del Cuerpo MΓ©dico del HNAAA 13 (1), 78-83 4 2020
Recomendaciones para describir de forma adecuada una curva epidΓ©mica de COVID-19 S Loyola, A Valle, S Montero, G Carrasco-Escobar Revista Peruana de Medicina Experimental y Salud PΓΊblica 37 (2) 2 2020
CLIMATE EFFECTS RELATED TO OUTBREAKS OF ACUTE CASES OF CARRION DISEASE IN PERU, 2000-2016 U Ulloa, C Munayco, A Valle, A Lescano AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE 101, 49-49 0 2019
HUMAN MOBILITY AND MALARIA HISTORY IN A PERIURBAN COMMUNITY OF THE PERUVIAN AMAZON AV Campos, JL Maguina, G Ulloa, KM Arista, V Pinedo-Cancino, … AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE 101, 97-98 0 2019
IgG subclass responses to excreted-secreted antigens of Plasmodium falciparum in a low-transmission malaria area of the Peruvian Amazon R Saavedra-Langer, J Marapara, A Valle-Campos, S Durand, … Malaria journal 17 (1), 328 5 2018

resources

R packages πŸ“¦

status: learning in progress!

  • πŸ’™ serosurvey - estimate prevalences.
  • 🚧 incidenceflow - epidemic workflows.
  • πŸ’š covid19viz - access covid-19 data.
  • πŸ’š powder - tidy power analysis.
  • 🚧 sitreper - situational reports in peru.
  • πŸ’š cdcper - funciones para el cdc perΓΊ.
  • πŸ’š epichannel - create endemic channels.
  • πŸ’š epitidy - table and model outputs.
  • 🚧 epihelper - custom (cool) funtions.

dashboards

templates

lifeguards

  • πŸ“‘ I have a code cheatsheet full of reproducible examples in gist;
  • 🌍 I have contributed answers for the stackoverflow community;
  • πŸ’Œ I collect helpful links for a lot of topics in a public trello board.

workshops

workshops

πŸ–οΈ [ES] Introduction to statistical analysis of epidemics, 2021

πŸ–οΈ [ES] Introduction to R and Rstudio, 2021

πŸ–οΈ [ES] Introduction to ggplot2, 2021

πŸ–οΈ [ES] Introduction to the use of R projects, 2021

πŸ–οΈ [ES] Epidemiological analysis in R, 2019

πŸ–οΈ [ES] Inferential statistics in R, 2019

πŸ–οΈ [ES] Microarray analysis with Tidyverse and Bioconductor, 2019

πŸ–οΈ [ES] Reproducible Science and Microarray Analysis, 2017


lectures

lectures

πŸ“Œ [ES] Data analysis in epidemiological surveillance II: spatial analysis, 2021

πŸ“Œ [ES] Data analysis in epidemiological surveillance I: time, space, person and epidemic curve, 2021

πŸ“Œ [ES] Visualizing public health and field epidemiology data, 2021

πŸ“Œ [ES] Algorithms for the detection of aberrations in epidemiological surveillance, 2020

πŸ“Œ [ES] Tardigrades and Bioinformatics in Horizontal Gene Transfer, 2016

πŸ“Œ [ES] Gene regulatory networks using graph theory and finite automatas, 2015-2017


talks

talks

πŸ”” serosurvey: Serological Surveys and Prevalence Estimation Under Misclassification, 2021

πŸ”” [ES] Introduction to spatial analysis, 2021

πŸ”” [ES] Analysis of #multiple epidemics and prevalences with R and purrr, 2020

πŸ”” [ES] Causal questions for hypothetical interventions, 2020

πŸ”” [ES] Hypothesis testing with nonparametric statistical methods, 2020

πŸ”” [ES] Epidemiological analysis of the epidemic of Guillain BarrΓ© Syndrome in Peru, 2019

πŸ”” Human mobility and malaria history in a periurban community of the Peruvian Amazon, 2019

πŸ”” [ES] R applied to epidemiology, 2019


about

about me

avallecam

  • 🌞 Stands for andree valle campos.
  • πŸ’• I intentionally used cam because I am #tusan

Β© πŸ„― Andree Valle-Campos, 2021